| | | | Spolský p. | 117300800100 | *** | | ** | | | | |
| | | | Petrovický p. | 117301100100 | *** | | ** | | | | |
| | | | Kaňovský p. | 117301700100 | *** | | ** | | | | |
| | | | bezejmenný tok | 117301702600 | *** | | ** | | | | |
| | | | Miletínský p. | 117320000100 | *** | | ** | | | | |
| | | | Lišovský p. | 117330000100 | *** | | ** | | | | |
| | | | Hůrecký p. | 117350000100 | *** | | ** | | | | |
| | | | Tisý p. | 117370003000 | *** | | ** | | | | |
| | | | bezejmenný tok | 117390001200 | *** | | ** | | | | |
| | | | Ponědražský p. | 117410000100 | *** | | ** | | | | |
| | | | Dubenský p. | 117410002400 | *** | | ** | | | | |
| | | | Mazelovský p. | 117410002500 | *** | | ** | | | | |
| | | | bezejmenný tok | 117410002800 | *** | | ** | | | | |
| | | | bezejmenný tok | 117430001200 | *** | | ** | | | | |
| | | | Bukovský p. | 117440000100 | *** | | ** | | | | |
| | | | Bošilecký p. | 117450000100 | *** | | ** | | | | |
| 67 L | Kamenice (Jihočeská) | Kamenice | 117550000100 | | | * | 24,1 | do soutoku s Nežárkou | 0.0 | | 50 | 1-07-03 část |
| | | | Včelnička | 117600000100 | * | | ** | | | | |
| | | | Bohdalínský p. | 117630000100 | * | | ** | | | | |
| | | | Lhotský p. | 117660000100 | * | | ** | | | | |
| | | | Krupčinský p. | 117660200100 | * | | ** | | | | |
| | | | Rosička | 117660400100 | * | | ** | | | | |
| 68 K | Nežárka horní | Nežárka | 117740000100 | | | * | 54,6 | do soutoku s Hamerským p. | 44,0 | | 80 | 1-07-03 část |
| | | | Žirovnice | 117670000100 | * | | ** | | | | |
| | | | Ctibořský p. | 117680000100 | * | | ** | | | | |
| | | | Počátecký p. | 117700000100 | * | | ** | | | | |
| | | | bezejmenný tok | 117700001600 | * | | ** | | | | |
| | | | Popruský p. | 117700004000 | * | | ** | | | | |
| | | | bezejmenný tok | 117700007800 | * | | ** | | | | |
| | | | Brodek | 117720000100 | * | | ** | | | | |
| | | | Radouňský p. | 117750000100 | * | | ** | | | | |
| | | | Lodhéřovský p. | 117760000100 | * | | ** | | | | |
| | | | Ratmírovský p. | 117790000100 | * | | ** | | | | |
| 69 K | Hamerský p. | Hamerský p. | 117810000100 | | | * | 40,6 | do soutoku s Nežárkou | 0,0 | | 88 | 1-07-03 část |
| | | | Doubravský p. | 117820000100 | * | | ** | | | | |
| | | | Studenský p. | 117840000100 | * | | ** | | | | |
| | | | Jeníkovský p. | 117840004000 | * | | ** | | | | |
| | | | bezejmenný tok | 117850001600 | * | | ** | | | | |
| | | | Kamenitý p. | 117860000100 | * | | ** | | | | |
| | | | Chlum | 117880000100 | * | | ** | | | | |
| | | | bezejmenný tok | 117880000600 | * | | ** | | | | |
| | | | Vlčický p. | 117910002000 | * | | ** | | | | |
| | | | Lomský p. | 117910003600 | * | | ** | | | | |
| | | | Lomský p. | 117920000100 | * | | ** | | | | |
| | | | Olešná | 117940000100 | * | | ** | | | | |
| | | | Holub | 117950000100 | * | | ** | | | | |
| 70 K | Nežárka dolní | Nežárka | 117740000100 | | | od soutoku s Hamerským p. | 44,0 | do soutoku s Lužnicí | 0,0 | | 139 | 1-07-03 část |
| | | | Rudolfovský p. | 117980000200 | * | | ** | | | | |
| | | | Bukovský p. | 117980001700 | * | | ** | | | | |
| | | | Řečička | 1-17990000100 | * | | ** | | | | |
| | | | bezejmenný tok | 117990001800 | * | | ** | | | | |
| | | | Pěnenský p. | 118010000100 | * | | ** | | | | |
| | | | Lásenice | 118030000100 | * | | ** | | | | |
| | | | bezejmenný tok | 118030002500 | * | | ** | | | | |
| | | | Vyderský p. | 118050000100 | * | | ** | | | | |
| | | | Stříbřecký p. | 118060109000 | * | | ** | | | | |
| | | | Holenský p. | 118130000100 | * | | ** | | | | |
| | | | Rečice | 118150000100 | * | | ** | | | | |
| | | | Klenovský p. | 118150000400 | * | | ** | | | | |
| | | | Mnišský p. | 118150005200 | * | | ** | | | | |
| | | | Kardašský p. | 118160000100 | * | | ** | | | | |
| | | | Vřesenský p. | 118190000100 | * | | ** | | | | |
| 71 L | Dírenský p. | Dírenský p. | 118310000100 | | | * | 31,8 | do soutoku s Lužnicí | 0,0 | | 42 | 1-07-04 část |
| | | | Březinský p. | 118380000100 | * | | ** | | | | |
| | | | Ryšánský p. | 118400000100 | * | | ** | | | | |
| | | | Těšínský p. | 118420000100 | * | | ** | | | | |
| | | | Mlýnský p. | 118440000100 | * | | ** | | | | |
| 72 L | Chotovinský p. | Chotovinský p. (Kozský p.) | 118710000100 | | | * | 23,0 | do soutoku s Lužnicí | 0,0 | | 68 | 1-07-04 část |
| | | | Malenínský p. | 118720000100 | * | | ** | | | | |
| | | | Ratibořský p. | 118740000100 | * | | ** | | | | |
| | | | Chýnovský p. | 118760000100 | * | | ** | | | | |
| | | | Chotčinský p. | 118760000600 | * | | ** | | | | |
| | | | Velmovický p. | 118770000100 | * | | ** | | | | |
| | | | Stříbrný p. | 118800000100 | * | | ** | | | | |
| | | | Turovecký p. | 118820000100 | * | | ** | | | | |
| | | | Bělá | 118830000100 | * | | ** | | | | |
| | | | bezejmenný | 118840003000 | * | | ** | | | | |
| 73 K | Lužnice táborská | Lužnice | 116920000100 | | | od soutoku s Nežárkou | 74,4 | do soutoku s Vltavou | 0,0 | | 246 | 1-07-04 část |
| | | | Bechyňský p. | 118240000100 | * | | ** | | | | |
| | | | Hlavatecký p. | 118240100400 | * | | ** | | | | |
| | | | bezejmenný tok | 118250000600 | * | | ** | | | | |
| | | | Zálšký p. (Brod) | 118250003600 | * | | ** | | | | |
| | | | Olešenský p. | 118260000100 | * | | ** | | | | |
| | | | Doňovský p. | 118290000100 | * | | ** | | | | |
| | | | bezejmenný tok | 118560000800 | * | | ** | | | | |
| | | | Radimovský p. | 118600002600 | * | | ** | | | | |
| | | | Borecký p. | 118630000100 | * | | ** | | | | |
| | | | bezejmenný tok | 118630001600 | * | | ** | | | | |
| | | | bezejmenný tok | 118630002600 | * | | ** | | | | |
| | | | Stružka | 118640000100 | * | | ** | | | | |
| | | | Maršovský p. | 118670000100 | * | | ** | | | | |
| | | | Lomský p. | 118670000800 | * | | ** | | | | |
| | | | Oborský p. | 118680000100 | * | | ** | | | | |
| | | | Bezděčínský p. | 118680000400 | * | | ** | | | | |
| | | | Košínský p. | 118870000100 | * | | ** | | | | |
| | | | Kostelecký p. | 118920000100 | * | | ** | | | | |
| | | | Radimovický p. | 118940000100 | * | | ** | | | | |
| | | | Rašťský p. | 118970000100 | * | | ** | | | | |
| | | | Vlásenický p. | 118990000100 | * | | ** | | | | |
| | | | Příběnický p. | 119020000200 | * | | ** | | | | |
| | | | Oltyňský p. | 119030000100 | * | | ** | | | | |
| | | | Židova strouha | 119330000100 | * | | ** | | | | |
| | | | Blatecký p. | 119340000100 | * | | ** | | | | |
| | | | bezejmenný tok | 119340000200 | * | | ** | | | | |
| | | | Nuzický p. | 119360000600 | * | | ** | | | | |
| | | | Bílinský p. | 119370000100 | * | | ** | | | | |
| 74 K | Smutná | Smutná (Cedron) | 119130000100 | | | * | 38,2 | do soutoku s Lužnicí | 0,0 | | 59 | 1-07-04 část |
| | | | Petříkovický p. | 119160000100 | * | | ** | | | | |
| | | | Nadějkovský p. | 119180000100 | * | | ** | | | | |
| | | | Milevský p. | 119220000100 | * | | ** | | | | |
| | | | Držkrajovský p. | 119250000100 | * | | ** | | | | |
| | | | Farkův p. | 119260001800 | * | | ** | | | | |
| | | | Kolišovský p. | 119280000100 | * | | ** | | | | |
| 75 K | Černovický p. | Černovický p. | 118470000100 | | | * | 32,7 | do soutoku s Lužnicí | 0,0 | | 39 | 1-07-04 část |
| | | | Javornička | 118480000100 | * | | ** | | | | |
| | | | Brusník | 118540000100 | * | | ** | | | | |
| | | | Kamenitý p. | 118560000100 | * | | ** | | | | |
| | | | Katovský p. | 118580000100 | * | | ** | | | | |
| 78 K | Přítoky VN Orlík | | | | | | | | | | 67 | |
| | Karlovka | 119400000100 | | | * | 3,9 | ** | 0,0 | | | 1-07-05 část |
| | Albrechtický p. | 119420000100 | | | * | | ** | | | | |
| | Jehnědenský p. | 119440000100 | | | * | | ** | | | | |
| | Chřešťovický p. | 119480000100 | | | * | | ** | | | | |
| | Novosedlský p. | 119500000100 | | | * | 4,1 | ** | 0,0 | | | |
| | Velký p. | 119510000100 | | | * | | ** | | | | |
| | Jetětický p. | 119530000100 | | | * | | ** | | | | |
| | Křenecký p. | 119550000100 | | | * | 4,9 | ** | 0,0 | | | |
| | Hrejkovický p. | 119570000100 | | | * | 17,3 | ** | 0,0 | | | |
| | Osecký p. | 119580000100 | | | * | | ** | | | | |
| | Jickovický p. (Sobědražský) | 119610000100 | | | * | 14,0 | ** | 0,0 | | | |
| | Jelení p. | 123600001400 | | | * | | ** | | | | 1-08-05 část |
| | Žebrákovský p. | 123610000100 | | | * | | ** | | | | |
| 77 L | Otava šumavská | Otava | 120020000100 | | | * | 112,8 | do soutoku s Losenicí | 107,7 | včetně Losenice, NP Šumava | 132 | 1-08-01 část |
| | | | Vydra | 119650000100 | od soutoku s Ptačím p. | | ** | | | | |
| | | | bezejmenný tok | 119650000200 | * | | ** | | | | |
| | | | bezejmenný tok | 119650001000 | * | | ** | | | | |
| | | | Ptačí p. | 119660000100 | * | | ** | | | | |
| | | | Černohorský p. | 119680000100 | * | | ** | | | | |
| | | | Filipohuťský p. | 119690000200 | * | | ** | | | | |
| | | | bezejmenný tok | 119690001900 | * | | ** | | | | |
| | | | Roklanský p. | 119700000100 | od soutoku s Novohuťským p. | | ** | | | | |
| | | | bezejmenný tok | 119700000400 | * | | ** | | | | |
| | | | bezejmenný tok | 119700001000 | * | | ** | | | | |
| | | | Rokytka | 119710000100 | * | | ** | | | | |
| | | | bezejmenný tok | 119710000400 | * | | ** | | | | |
| | | | Studený p. | 119720000600 | * | | ** | | | | |
| | | | Javoří p. | 119730000100 | * | | ** | | | | |
| | | | bezejmenný tok | 119730000200 | * | | ** | | | | |
| | | | bezejmenný tok | 119730000400 | * | | ** | | | | |
| | | | Tmavý p. | 119740000100 | * | | ** | | | | |
| | | | Hamerský p. | 119790000100 | * | | ** | | | | |
| | | | Ranklovský p. | 119790002200 | * | | ** | | | | |
| | | | bezejmenný tok | 119790003100 | * | | ** | | | | |
| | | | Popelný p. | 119800000400 | * | | ** | | | | |
| | | | Hrádecký p. | 119810000100 | * | | ** | | | | |
| | | | Křemelná | 119830000100 | * | | ** | | | | |
| | | | bezejmenný tok | 119830005400 | * | | ** | | | | |
| | | | Slatinný p. | 119840000100 | * | | ** | | | | |
| | | | bezejmenný tok | 119840004000 | * | | ** | | | | |
| | | | Drozdí p. | 119850000100 | * | | ** | | | | |
| | | | Jezerní p. | 119880000100 | * | | ** | | | | |
| | | | Prášilský p. | 119900000100 | * | | ** | | | | |
| | | | bezejmenný tok | 119900000200 | * | | ** | | | | |
| | | | bezejmenný tok | 119900000800 | * | | ** | | | | |
| | | | Smrkový p. | 119910000100 | * | | ** | | | | |
| | | | Losenice | 120050000100 | * | | ** | | | | |
| 78 L | Otava horní | Otava | 120020000100 | | | od soutoku s Losenicí | 107,7 | do soutoku s Veřechovským p. | 67,5 | včetně Veřechovského p. | 215 | 1-08-01 část |
| | | | Pěnivý p. | 120060000100 | * | | ** | | | | |
| | | | Zlatý p. | 120080000100 | * | | ** | | | | |
| | | | Opolenecký p. | 120110000100 | * | | ** | | | | |
| | | | Radešovský p. | 120130000100 | * | | ** | | | | |
| | | | Luční p. | 120170000100 | * | | ** | | | | |
| | | | Divišovský p. | 120190000100 | * | | ** | | | | |
| | | | Volšovka | 120210000100 | * | | ** | | | | |
| | | | Kepelský p. | 120220000100 | * | | ** | | | | |
| | | | Pařezí p. | 120230000100 | * | | ** | | | | |
| | | | bezejmenný tok | 120270000400 | * | | ** | | | | |
| | | | bezejmenný tok | 120280000200 | * | | ** | | | | |
| | | | Ostružná | 120290000100 | *** | | ** | | | | |
| | | | bezejmenný tok | 120290001400 | * | | ** | | | | |
| | | | Šukačka | 120300000100 | * | | ** | | | | |
| | | | bezejmenný tok | 120310000600 | * | | ** | | | | |
| | | | Čeletický p. | 120340000100 | * | | ** | | | | |
| | | | Jindřichovický p. | 120360000100 | * | | ** | | | | |